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DNA barcoding reveals the coral "laboratory-rat'', Stylophora pistillata encompasses multiple identities ArchiMer
Keshavmurthy, Shashank; Yang, Sung-yin; Alamaru, Ada; Chuang, Yao-yang; Pichon, Michel; Obura, David; Fontana, Silvia; De Palmas, Stephane; Stefani, Fabrizio; Benzoni, Francesca; Macdonald, Angus; Noreen, Annika M. E.; Chen, Chienshum; Wallace, Carden C.; Pillay, Ruby Moothein; Denis, Vianney; Amri, Affendi Yang; Reimer, James D.; Mezaki, Takuma; Sheppard, Charles; Loya, Yossi; Abelson, Avidor; Mohammed, Mohammed Suleiman; Baker, Andrew C.; Mostafavi, Pargol Ghavam; Suharsono, Budiyanto A.; Chen, Chaolun Allen.
Stylophora pistillata is a widely used coral "lab-rat'' species with highly variable morphology and a broad biogeographic range (Red Sea to western central Pacific). Here we show, by analysing Cytochorme Oxidase I sequences, from 241 samples across this range, that this taxon in fact comprises four deeply divergent clades corresponding to the Pacific-Western Australia, Chagos-Madagascar-South Africa, Gulf of Aden-Zanzibar-Madagascar, and Red Sea-Persian/Arabian Gulf-Kenya. On the basis of the fossil record of Stylophora, these four clades diverged from one another 51.5-29.6 Mya, i.e., long before the closure of the Tethyan connection between the tropical Indo-West Pacific and Atlantic in the early Miocene (16-24 Mya) and should be recognised as four...
Tipo: Text
Ano: 2013 URL: https://archimer.ifremer.fr/doc/00217/32845/31291.pdf
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Social–environmental drivers inform strategic management of coral reefs in the Anthropocene ArchiMer
Darling, Emily S.; Mcclanahan, Tim R.; Maina, Joseph; Gurney, Georgina G.; Graham, Nicholas A. J.; Januchowski-hartley, Fraser; Cinner, Joshua E.; Mora, Camilo; Hicks, Christina C.; Maire, Eva; Puotinen, Marji; Skirving, William J.; Adjeroud, Mehdi; Ahmadia, Gabby; Arthur, Rohan; Bauman, Andrew G.; Beger, Maria; Berumen, Michael L.; Bigot, Lionel; Bouwmeester, Jessica; Brenier, Ambroise; Bridge, Tom C. L.; Brown, Eric; Campbell, Stuart J.; Cannon, Sara; Cauvin, Bruce; Chen, Chaolun Allen; Claudet, Joachim; Denis, Vianney; Donner, Simon; Estradivari,; Fadli, Nur; Feary, David A.; Fenner, Douglas; Fox, Helen; Franklin, Erik C.; Friedlander, Alan; Gilmour, James; Goiran, Claire; Guest, James; Hobbs, Jean-paul A.; Hoey, Andrew S.; Houk, Peter; Johnson, Steven; Jupiter, Stacy D.; Kayal, Mohsen; Kuo, Chao-yang; Lamb, Joleah; Lee, Michelle A. C.; Low, Jeffrey; Muthiga, Nyawira; Muttaqin, Efin; Nand, Yashika; Nash, Kirsty L.; Nedlic, Osamu; Pandolfi, John M.; Pardede, Shinta; Patankar, Vardhan; Penin, Lucie; Ribas-deulofeu, Lauriane; Richards, Zoe; Roberts, T. Edward; Rodgers, Ku’ulei S.; Safuan, Che Din Mohd; Sala, Enric; Shedrawi, George; Sin, Tsai Min; Smallhorn-west, Patrick; Smith, Jennifer E.; Sommer, Brigitte; Steinberg, Peter D.; Sutthacheep, Makamas; Tan, Chun Hong James; Williams, Gareth J.; Wilson, Shaun; Yeemin, Thamasak; Bruno, John F.; Fortin, Marie-josée; Krkosek, Martin; Mouillot, David.
Without drastic efforts to reduce carbon emissions and mitigate globalized stressors, tropical coral reefs are in jeopardy. Strategic conservation and management requires identification of the environmental and socioeconomic factors driving the persistence of scleractinian coral assemblages—the foundation species of coral reef ecosystems. Here, we compiled coral abundance data from 2,584 Indo-Pacific reefs to evaluate the influence of 21 climate, social and environmental drivers on the ecology of reef coral assemblages. Higher abundances of framework-building corals were typically associated with: weaker thermal disturbances and longer intervals for potential recovery; slower human population growth; reduced access by human settlements and markets; and...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00512/62324/66605.pdf
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Taxonomy and phylogenetic relationships of the coral genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae) ArchiMer
Arrigoni, Roberto; Richards, Zoe T.; Chen, Chaolun Allen; Baird, Andrew H.; Benzoni, Francesca.
Novel micromorphological characters in combination with molecular studies have led to an extensive revision of the taxonomy and systematics of scleractinian corals. In the present work, we investigate the macro- and micromorphology and the phylogenetic position of the genera Australomussa and Parascolymia, two monotypic genera ascribed to the family Lobophylliidae. The molecular phylogeny of both genera was addressed using three markers, the partial mitochondrial COI gene and the nuclear histone H3 and the ribosomal ITS region. Based on molecular data, Australomussa and Parascolymia belong to the Lobophylliidae and they cluster together with the genera Lobophyllia and Symphyllia within the same clade. While A. rowleyensis and P. vitiensis are closely...
Tipo: Text Palavras-chave: COI; Evolution; Histone H3; Lobophyllia; Pacific Ocean; RDNA; Symphyllia; Systematics; Taxonomic revision.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00298/40912/39970.pdf
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When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus ArchiMer
Arrigoni, Roberto; Benzoni, Francesca; Huang, Danwei; Fukami, Hironobu; Chen, Chaolun Allen; Berumen, Michael L.; Hoogenboom, Mia; Thomson, Damian P.; Hoeksema, Bert W.; Budd, Ann F.; Zayasu, Yuna; Terraneo, Tullia I.; Kitano, Yuko F.; Baird, Andrew H..
The scleractinian family Lobophylliidae is undergoing a major taxonomic revision thanks to the combination of molecular and morphological data. In this study, we investigate the evolutionary relationships and the macro- and micromorphology of six nominal coral species belonging to two of the nine molecular clades of the Lobophylliidae, clades A and B, and of Symphyllia wilsoni, a lobophylliid species analyzed from a molecular point of view for the first time. Sequence data from mitochondrial DNA (COI and the intergenic spacer between COI and l-rRNA), and nuclear DNA (histone H3 and ITS region) are used to generate robust molecular phylogenies and a median-joining haplotype network. Molecular results are strongly in agreement with detailed observations of...
Tipo: Text Palavras-chave: Coral; Evolution; Phylogeny; Systematics; Taxonomy.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00585/69699/67565.pdf
Registros recuperados: 4
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